Genome modifications in plant cells by custom-made restriction enzymes

From Agrobacterium to viral vectors: genome modification of plant cells by rare cutting restriction enzymes.

Researchers and biotechnologists require methods to accurately modify the genome of higher eukaryotic cells. Such modifications include, but are not limited to, site-specific mutagenesis, site-specific insertion of foreign DNA, and replacement and deletion of native sequences. Accurate genome modifications in plant species have been rather limited, with only a handful of plant species and genes...

Custom Made Mold Brachytherapy

Revised Selection Criteria for Candidate Restriction Enzymes in Genome Walking

A new method to improve the efficiency of flanking sequence identification by genome walking was developed based on an expanded, sequential list of criteria for selecting candidate enzymes, plus several other optimization steps. These criteria include: step (1) initially choosing the most appropriate restriction enzyme according to the average fragment size produced by each enzyme determined us...

Toponym recognition in custom-made map titles

The titles of customized topographic maps constitute a specific corpus which is characterized by a very significant number of place names and spelling variations. This paper is about identifying toponyms in these titles. The toponym tracking is based on gazetteers as well as light parsing according to patterns. The method used broadens the definition of the toponym to include the nature of the ...

Zinc finger nucleases: custom-designed molecular scissors for genome engineering of plant and mammalian cells

Custom-designed zinc finger nucleases (ZFNs), proteins designed to cut at specific DNA sequences, are becoming powerful tools in gene targeting--the process of replacing a gene within a genome by homologous recombination (HR). ZFNs that combine the non-specific cleavage domain (N) of FokI endonuclease with zinc finger proteins (ZFPs) offer a general way to deliver a site-specific double-strand ...